PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g012280.1
Common NameMTR_6g012280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ZF-HD
Protein Properties Length: 334aa    MW: 36016.9 Da    PI: 7.8387
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g012280.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.52.8e-3288145359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                       v+YkeClkNh a+lGgha+DGC+Efmps++++  ++a++kCaACgCHRnFHRre+ee
  Medtr6g012280.1  88 VVTYKECLKNHVATLGGHALDGCCEFMPSPTATsDDPASIKCAACGCHRNFHRREPEE 145
                      689***************************999788******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.9E-2789143IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.7E-2890142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2091142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.76691142IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.02E-19213283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-30217283IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-27222279IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMEVITATAT TTNTNTNTTS NSTNTTTSLT TNLTKEQQPE SENPTRIHQP ILSNITKPLS  60
FSNGVLKRHH PNHHNNNNNN VNNLNNVVVT YKECLKNHVA TLGGHALDGC CEFMPSPTAT  120
SDDPASIKCA ACGCHRNFHR REPEEPISTV FEYQPHHRHH PPPPPLFQSR SPSSPSPPPI  180
SSYPSAPHML LALSGAGVGL SIPPENTAAP LNHLSSPMGT SRKRFRTKFT QEQKEKMHEF  240
ADKVGWKMQK RDEEMVNGFC NEVGVDRSVL KVWMHNNKNT LGRKLSLDHV NGNGDSAAVN  300
ASVDGGSGGG CENENNGSNV AACGTTNGSS SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-212212801675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.156770.0leaf| root| seed| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1396000.0AC139600.16 Medicago truncatula chromosome 6 clone mth2-20m4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618493.20.0transcription factor HB29-like protein
SwissprotQ9LXG02e-72ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLG7KKI20.0G7KKI2_MEDTR; Transcription factor HB29-like protein
STRINGGLYMA13G05420.18e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-62homeobox protein 34
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]